cloudgene run¶
Executes a Cloudgene workflow on the command line. All input parameters of a workflow can be set through command-line paramters.
Command¶
cloudgene run <app_or_filename> <params> [--conf <hadoop_conf_dir>] [--user <hadoop_username>][--no-logging] [--no-output]
Parameters¶
| Parameter | Required | Description |
|---|---|---|
<app_or_filename> |
yes | The location of a cloudgene.yaml file or the id of an installed application. |
<params> |
yes | All input parameters of a workflow have to be set through the commandline. For example, if a input-paramter with id input was defined and is required, then the corresponding commandline-paramter is --input <value> |
--conf <hadoop_conf_dir> |
no | Path to Hadoop configuration folder (e.g. /etc/hadoop/conf)) |
--user <hadoop_username> |
no | Execute Hadoop steps on behalf of this username (default: cloudgene) |
--output |
no | Define a custom output folder (default: ./job_id). |
--show-log |
no | Stream logging messages to terminal. |
--show-output |
no | Stream output to terminal. |
--force |
no | Force Cloudgene to reinstall application in HDFS even if it already installed. |